ProMICA

Prostate Multimodal Interactive Cell Atlas

A cell-resolution platform for multimodal analysis of the human prostate.

For abbreviations and other questions, open the help control at the lower left. Further detail is in the accompanying manuscript, or contact the authors.

Anatomical illustration of the human prostate and bladder

Data overview

Single-cell transcriptomics

452,947 high-quality cells
7 clinical features
9 physiological or disease states

Spatial transcriptomics

2 Technology types
Sequencing-based (Visium, Slide-seq); imaging-based (CosMx)
85 pathology sections
9 physiological or disease states

Single-cell transcriptomics

An organ-scale atlas assembled from publicly available prostate single-cell transcriptomic samples that provide upstream data.

Click here

Spatial transcriptomics

Sequencing-based and imaging-based spatial transcriptomic data.

Click here

ProMICA Skill

LLM-assisted exploration

Query the atlas and run analyses in a compatible AI assistant.

  1. Your question
  2. LLM + Skill
  3. ProMICA
Download Skill Usage guide →
UMAP of prostate cell types
UMAP coloured by gene expression
Violin plot of KLK3 expression across conditions
Correlation of AR and KLK3 mean expression
Volcano plot of differential expression
Pathway enrichment for high versus low expression
GSEA running-score plot for androgen response